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LOC112880425 glucan endo-1,3-beta-glucosidase 4 [ Panicum hallii ]

Gene ID: 112880425, updated on 21-Dec-2023

Summary

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Gene symbol
LOC112880425
Gene description
glucan endo-1,3-beta-glucosidase 4
Locus tag
PAHAL_2G424300
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum hallii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum
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Genomic context

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See LOC112880425 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
100 current PHallii_v3.1 (GCF_002211085.1) 2 NC_038043.1 (53073450..53080816)

Chromosome 2 - NC_038043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112881296 Neighboring gene uncharacterized LOC112883255 Neighboring gene activating signal cointegrator 1 complex subunit 2 homolog Neighboring gene photosystem I chlorophyll a/b-binding protein 2, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_038043.1 Chromosome 2 Reference PHallii_v3.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum hallii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PHallii_v3.1

Genomic

  1. NC_038043.1 Reference PHallii_v3.1

    Range
    53073450..53080816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025945050.1 → XP_025800835.1  glucan endo-1,3-beta-glucosidase 4 isoform X2

    Conserved Domains (3) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl00154
    Location:535 → 674
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    cl23725
    Location:25 → 346
    Glyco_hydro_1; Glycosyl hydrolase family 1

  2. XM_025945048.1 → XP_025800833.1  glucan endo-1,3-beta-glucosidase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2S3H3F8, A0A2T7EXT5
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro_1; Glycosyl hydrolase family 1

  3. XM_025945049.1 → XP_025800834.1  glucan endo-1,3-beta-glucosidase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2S3H3F8, A0A2T7EXT5
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein Strain
Heading Accession and Version

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