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SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112647291, updated on 21-Jul-2018

Summary

Gene symbol
SPECC1
Gene description
sperm antigen with calponin homology and coiled-coil domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs

Genomic context

See SPECC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM325472v1 (GCF_003254725.1) Unplaced Scaffold NW_020269191.1 (48963730..49190601)

NW_020269191.1Genomic Context describing neighboring genes Neighboring gene A-kinase anchoring protein 10 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP1A pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA18 Neighboring gene adenosine A2b receptor Neighboring gene zinc finger SWIM-type containing 7

Genomic regions, transcripts, and products

Genomic Sequence:
NW_020269191 Unplaced Scaffold Reference ASM325472v1

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v1

Genomic

  1. NW_020269191.1 Reference ASM325472v1

    Range
    48963730..49190601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025428243.1XP_025284028.1  cytospin-B isoform X1

    Conserved Domains (4) summary
    cd00014
    Location:9571057
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR04211
    Location:164260
    SH3_and_anchor; SH3 domain protein
    cl25732
    Location:356726
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27055
    Location:683793
    MutS_III; MutS domain III
  2. XM_025428244.1XP_025284029.1  cytospin-B isoform X1

    Conserved Domains (4) summary
    cd00014
    Location:9571057
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR04211
    Location:164260
    SH3_and_anchor; SH3 domain protein
    cl25732
    Location:356726
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27055
    Location:683793
    MutS_III; MutS domain III
  3. XM_025428246.1XP_025284031.1  cytospin-B isoform X3

    Conserved Domains (1) summary
    cl25732
    Location:356726
    SMC_N; RecF/RecN/SMC N terminal domain
  4. XM_025428242.1XP_025284027.1  cytospin-B isoform X1

    Conserved Domains (4) summary
    cd00014
    Location:9571057
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR04211
    Location:164260
    SH3_and_anchor; SH3 domain protein
    cl25732
    Location:356726
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27055
    Location:683793
    MutS_III; MutS domain III
  5. XM_025428245.1XP_025284030.1  cytospin-B isoform X2

    Conserved Domains (4) summary
    cd00014
    Location:876976
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    TIGR04211
    Location:83179
    SH3_and_anchor; SH3 domain protein
    cl25732
    Location:275645
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27055
    Location:602712
    MutS_III; MutS domain III
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