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SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 [ Theropithecus gelada (gelada) ]

Gene ID: 112608995, updated on 21-Jul-2018

Summary

Gene symbol
SPECC1
Gene description
sperm antigen with calponin homology and coiled-coil domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Theropithecus gelada
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Theropithecus
Orthologs

Genomic context

See SPECC1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Tgel_1.0 (GCF_003255815.1) 16 NC_037684.1 (73068817..73387427, complement)

Chromosome 16 - NC_037684.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 5 pseudogene Neighboring gene coiled-coil domain-containing protein 144A-like Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene BTB/POZ domain-containing protein KCTD9 pseudogene Neighboring gene A-kinase anchoring protein 10 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene unc-51 like autophagy activating kinase 2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037684.1 Chromosome 16 Reference Tgel_1.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Theropithecus gelada Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tgel_1.0 Primary Assembly

Genomic

  1. NC_037684.1 Reference Tgel_1.0 Primary Assembly

    Range
    73068817..73387427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025361227.1XP_025217012.1  cytospin-B isoform X2

    Conserved Domains (2) summary
    cd00014
    Location:9661066
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl25732
    Location:364771
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_025361226.1XP_025217011.1  cytospin-B isoform X2

    Conserved Domains (2) summary
    cd00014
    Location:9661066
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl25732
    Location:364771
    SMC_N; RecF/RecN/SMC N terminal domain
  3. XM_025361225.1XP_025217010.1  cytospin-B isoform X1

    Conserved Domains (3) summary
    cd00014
    Location:10071107
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl25732
    Location:405812
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28033
    Location:9195
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
  4. XM_025361229.1XP_025217014.1  cytospin-B isoform X3

    Conserved Domains (2) summary
    cd00014
    Location:885985
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl25732
    Location:283690
    SMC_N; RecF/RecN/SMC N terminal domain
  5. XM_025361231.1XP_025217016.1  cytospin-B isoform X4

    Conserved Domains (2) summary
    pfam09726
    Location:172505
    Macoilin; Transmembrane protein
    cl25732
    Location:370726
    SMC_N; RecF/RecN/SMC N terminal domain
  6. XM_025361232.1XP_025217017.1  cytospin-B isoform X5

    Conserved Domains (2) summary
    pfam09726
    Location:91424
    Macoilin; Transmembrane protein
    cl25732
    Location:289645
    SMC_N; RecF/RecN/SMC N terminal domain
  7. XM_025361233.1XP_025217018.1  cytospin-B isoform X6

    Conserved Domains (2) summary
    pfam09726
    Location:91424
    Macoilin; Transmembrane protein
    cl25732
    Location:289645
    SMC_N; RecF/RecN/SMC N terminal domain
  8. XM_025361230.1XP_025217015.1  cytospin-B isoform X4

    Conserved Domains (2) summary
    pfam09726
    Location:172505
    Macoilin; Transmembrane protein
    cl25732
    Location:370726
    SMC_N; RecF/RecN/SMC N terminal domain
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