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CYTOR cytoskeleton regulator RNA [ Homo sapiens (human) ]

Gene ID: 112597, updated on 23-Nov-2021

Summary

Official Symbol
CYTORprovided by HGNC
Official Full Name
cytoskeleton regulator RNAprovided by HGNC
Primary source
HGNC:HGNC:28717
See related
Ensembl:ENSG00000222041
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf59; LINC00152; NCRNA00152
Summary
This gene produces a long non-coding RNA that is overexpressed in cancer cells and promotes cell proliferation and epithelial-mesenchymal transition. This RNA may bind enhancer of zeste homolog 2 and participate in the transcriptional silencing of tumor suppressor genes. It may act as a sponge for microRNAs. Alternatively spliced variants have been observed. [provided by RefSeq, Dec 2017]
Expression
Broad expression in spleen (RPKM 10.4), bone marrow (RPKM 9.5) and 22 other tissues See more
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Genomic context

See CYTOR in Genome Data Viewer
Location:
2p11.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (87455427..87521518)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (87754946..87821037)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377635 Neighboring gene Sharpr-MPRA regulatory region 1379 Neighboring gene long intergenic non-protein coding RNA 1943 Neighboring gene uncharacterized LOC101928152 Neighboring gene uncharacterized LOC107985909 Neighboring gene platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 152

Clone Names

  • MGC4677, MGC17532, MGC88182, AC133644.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024204.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    BC009508, BC073906, BG198684, HY175246
    Related
    ENST00000414584.1
  2. NR_024205.3 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC133644
  3. NR_024206.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    BC009508, BG198684, HY175246
    Related
    ENST00000331944.10
  4. NR_146460.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    BG198684, CD640509
    Related
    ENST00000437561.1
  5. NR_146461.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC133644
    Related
    ENST00000644577.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    87455427..87521518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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