U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zfp979 zinc finger protein 979 [ Mus musculus (house mouse) ]

Gene ID: 112422, updated on 8-Feb-2025

Summary

Official Symbol
Zfp979provided by MGI
Official Full Name
zinc finger protein 979provided by MGI
Primary source
MGI:MGI:2148252
See related
Ensembl:ENSMUSG00000066000 AllianceGenome:MGI:2148252
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ssm1b; 2610305D13Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including early conceptus and ovary. Orthologous to human ZNF616 (zinc finger protein 616). [provided by Alliance of Genome Resources, Feb 2025]
Expression
Broad expression in liver E14 (RPKM 1.1), bladder adult (RPKM 0.9) and 17 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Zfp979 in Genome Data Viewer
Location:
4; 4 E1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (147696393..147727004, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (147611936..147642508, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr4:146902715-146903015 Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12057 Neighboring gene STARR-seq mESC enhancer starr_12058 Neighboring gene zinc finger protein 985 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146958877-146959178 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146960015-146960316 Neighboring gene high mobility group box 1-like pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:147051587-147051888 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147058330-147058631 Neighboring gene zinc finger protein 534 Neighboring gene STARR-seq mESC enhancer starr_12059 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147083962-147084263 Neighboring gene STARR-seq mESC enhancer starr_12060 Neighboring gene predicted gene 13137

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC112422

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145078.2NP_659544.2  uncharacterized protein LOC112422

    Status: VALIDATED

    Source sequence(s)
    AL606910, CD548052, CF161903, DV659285
    Consensus CDS
    CCDS59663.1
    UniProtKB/TrEMBL
    A2A799
    Related
    ENSMUSP00000038153.8, ENSMUST00000037565.14
    Conserved Domains (5) summary
    smart00349
    Location:2870
    KRAB; krueppel associated box
    COG5048
    Location:82407
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259279
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:2867
    KRAB; KRAB box
    pfam13465
    Location:355380
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    147696393..147727004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017319919.2XP_017175408.1  uncharacterized protein LOC112422 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:29346
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:256339
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:206226
    ZF_C2H2; C2H2 Zn finger [structural motif]