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aebp2 AE binding protein 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112152673, updated on 15-Mar-2024

Summary

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Gene symbol
aebp2
Gene description
AE binding protein 2
See related
Ensembl:ENSOMEG00000013074
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See aebp2 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
17
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG6 NC_050517.1 (15328475..15393462, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096088.1 (20507210..20572203)

Linkage Group LG6 - NC_050517.1Genomic Context describing neighboring genes Neighboring gene B-cell receptor-associated protein 29 Neighboring gene solute carrier organic anion transporter family member 1C1 Neighboring gene cGMP-inhibited 3',5'-cyclic phosphodiesterase A Neighboring gene pleckstrin homology domain containing, family A member 5 Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESC/E(Z) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein AEBP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050517.1 Reference ASM292280v2 Primary Assembly

    Range
    15328475..15393462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024282401.2 → XP_024138169.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Related
    ENSOMEP00000011754.1
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  2. XM_024282403.2 → XP_024138171.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  3. XM_024282400.2 → XP_024138168.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  4. XM_024282402.2 → XP_024138170.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  5. XM_036212309.1 → XP_036068202.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  6. XM_024282399.2 → XP_024138167.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  7. XM_024282405.2 → XP_024138173.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  8. XM_036212308.1 → XP_036068201.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  9. XM_024282397.2 → XP_024138165.1  zinc finger protein AEBP2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3C2E5, A0A834BWR2
    Related
    ENSOMEP00000011709.1
    Conserved Domains (3) summary
    COG5271
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain

  10. XM_024282406.2 → XP_024138174.1  zinc finger protein AEBP2 isoform X2

    UniProtKB/TrEMBL
    A0A3B3C1J7, A0A834BWR2
    Related
    ENSOMEP00000011700.1
    Conserved Domains (3) summary
    sd00017
    Location:216 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:263 → 289
    zf-H2C2_2; Zinc-finger double domain
    cl26761
    Location:8 → 203
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_002920361.2 RNA Sequence

  2. XR_002920365.2 RNA Sequence

  3. XR_002920368.2 RNA Sequence

  4. XR_002920367.2 RNA Sequence

  5. XR_002920364.2 RNA Sequence

  6. XR_002920366.2 RNA Sequence

  7. XR_004948026.1 RNA Sequence

  8. XR_002920363.2 RNA Sequence

  9. XR_002920369.2 RNA Sequence

  10. XR_004948025.1 RNA Sequence

  11. XR_002920362.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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