U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112143274 cytochrome P450 11B, mitochondrial [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112143274, updated on 10-Jul-2024
Gene symbol
LOC112143274
Gene description
cytochrome P450 11B, mitochondrial
See related
EnsemblRapid:ENSOMEG00005017701
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
cyp11b; CYP11C1v2; CYP11c1v1
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See LOC112143274 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG16 NC_050527.1 (7392795..7399375, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096078.1 (7392795..7399310, complement)

Linkage Group LG16 - NC_050527.1Genomic Context describing neighboring genes Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 Neighboring gene pyruvate kinase L/R Neighboring gene uncharacterized LOC112143276 Neighboring gene dual specificity protein kinase CLK2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Exposure to DEHP and MEHP from hatching to adulthood causes reproductive dysfunction and endocrine disruption in marine medaka (Oryzias melastigma). Ye T, et al. Aquat Toxicol, 2014 Jan. PMID 24292025
  2. Whole spectrum of cytochrome P450 genes and molecular responses to water-accommodated fractions exposure in the marine medaka. Rhee JS, et al. Environ Sci Technol, 2013 May 7. PMID 23573833
  3. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in C21-steroid hormone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to peptide hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cortisol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucocorticoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
cytochrome P450 11B, mitochondrial
Names
cytochrome P450 11beta

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050527.1 Reference ASM292280v2 Primary Assembly

    Range
    7392795..7399375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036215763.1 → XP_036071656.1  cytochrome P450 11B, mitochondrial isoform X1

    UniProtKB/TrEMBL
    R9S2F9
    Conserved Domains (1) summary
    cl41757
    Location:93 → 557
    cytochrome_P450; cytochrome P450 (CYP) superfamily

  2. XM_024267121.2 → XP_024122889.1  cytochrome P450 11B, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A3B3BS07, R9S2F9
    Related
    ENSOMEP00005039904.1, ENSOMET00005044845.1
    Conserved Domains (1) summary
    pfam00067
    Location:63 → 535
    p450; Cytochrome P450
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases