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MST1P2 macrophage stimulating 1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 11209, updated on 10-Oct-2023

Summary

Official Symbol
MST1P2provided by HGNC
Official Full Name
macrophage stimulating 1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:7383
See related
AllianceGenome:HGNC:7383
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MSPL1; MSPL2; MSPL3; MSTP1; MSTP2; MSTP3; MSPL-1; MSPL-2; MSPL-3
Expression
Broad expression in liver (RPKM 20.6), duodenum (RPKM 18.7) and 18 other tissues See more
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Genomic context

See MST1P2 in Genome Data Viewer
Location:
1p36.13
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16645574..16650420)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (16273050..16277896)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (16972069..16976915)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16890771-16891648 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16892527-16893404 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr1:16893405-16894282 Neighboring gene NBPF member 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16902769-16903269 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16916551-16917050 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:16918378-16918567 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16929815-16930315 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16933765-16934266 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16934267-16934766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16939903-16940860 Neighboring gene rootletin-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16945048-16945716 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16945717-16946384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16946385-16947053 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16950326-16950836 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16963058-16963558 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16964533-16965424 Neighboring gene CROCC pseudogene 2 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr1:16970879-16971669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16971670-16972459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16973171-16973790 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16974411-16975030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16975031-16975648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16976311-16976811 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16983417-16984225 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16992232-16993198 Neighboring gene FAM231A/C-like protein LOC102723383 Neighboring gene RNA, U1 small nuclear 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2
  • macrophage stimulating, pseudogene 1
  • macrophage stimulating, pseudogene 2
  • macrophage stimulating, pseudogene 3

Clone Names

  • FLJ18435

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027504.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK293358, AL137798, AW629449, DC362930

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    16645574..16650420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    1161675..1166527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    16273050..16277896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001240.2: Suppressed sequence

    Description
    NG_001240.2: This RefSeq was permanently suppressed because it is now thought that this gene is pseudogene is transcribed. This gene is represented by NR_027504.