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afap1 actin filament associated protein 1 [ Salvelinus alpinus (Arctic char) ]

Gene ID: 111960326, updated on 15-Mar-2024

Summary

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Gene symbol
afap1
Gene description
actin filament associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus alpinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG37
Exon count:
19
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG37 NC_036876.1 (14675206..14781394)

Linkage Group LG37 - NC_036876.1Genomic Context describing neighboring genes Neighboring gene zinc finger, CCHC domain containing 4 Neighboring gene actin binding LIM protein family, member 2 Neighboring gene sortilin-related VPS10 domain containing receptor 2 Neighboring gene uncharacterized LOC111960270 Neighboring gene grpE protein homolog 1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036876.1 Chromosome LG37 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH2 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036876.1 Reference ASM291031v2 Primary Assembly

    Range
    14675206..14781394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023982293.2 → XP_023838061.1  actin filament-associated protein 1 isoform X2

    Conserved Domains (3) summary
    cd13306
    Location:147 → 253
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:345 → 444
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:628 → 732
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_023982292.2 → XP_023838060.1  actin filament-associated protein 1 isoform X1

    Conserved Domains (3) summary
    cd13306
    Location:158 → 264
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:356 → 455
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:639 → 743
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_023982294.2 → XP_023838062.1  actin filament-associated protein 1 isoform X3

    Conserved Domains (3) summary
    cd13306
    Location:158 → 264
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:356 → 455
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:559 → 663
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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