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afap1 actin filament associated protein 1 [ Salvelinus alpinus (Arctic char) ]

Gene ID: 111960326, updated on 27-Feb-2018

Summary

Gene symbol
afap1
Gene description
actin filament associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus alpinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs

Genomic context

See afap1 in Genome Data Viewer
Location:
chromosome: LG37
Exon count:
19
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG37 NC_036876.1 (14675206..14781394)

Linkage Group LG37 - NC_036876.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type containing 4 Neighboring gene actin-binding LIM protein 2 Neighboring gene VPS10 domain-containing receptor SorCS2 Neighboring gene uncharacterized LOC111960270 Neighboring gene grpE protein homolog 1, mitochondrial

Genomic regions, transcripts, and products

Genomic Sequence:
NC_036876.1 Chromosome LG37 Reference ASM291031v2 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036876.1 Reference ASM291031v2 Primary Assembly

    Range
    14675206..14781394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023982293.2XP_023838061.1  actin filament-associated protein 1 isoform X2

    Conserved Domains (3) summary
    cd13306
    Location:147253
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:345444
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:628732
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_023982292.2XP_023838060.1  actin filament-associated protein 1 isoform X1

    Conserved Domains (3) summary
    cd13306
    Location:158264
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:356455
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:639743
    SMC_N; RecF/RecN/SMC N terminal domain
  3. XM_023982294.2XP_023838062.1  actin filament-associated protein 1 isoform X3

    Conserved Domains (3) summary
    cd13306
    Location:158264
    PH1_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1
    cd13307
    Location:356455
    PH2_AFAP; Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 2
    cl25732
    Location:559663
    SMC_N; RecF/RecN/SMC N terminal domain
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