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LOC111777428 probable serine/threonine-protein kinase At1g54610 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

Gene ID: 111777428, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111777428
Gene description
probable serine/threonine-protein kinase At1g54610
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita pepo subsp. pepo (sub-species: pepo)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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Location:
chromosome: LG16
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM280686v2 (GCF_002806865.1) LG16 NC_036653.1 (7698515..7702141, complement)

Chromosome LG16 - NC_036653.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111777662 Neighboring gene probable serine/threonine-protein kinase At1g54610 Neighboring gene mannan endo-1,4-beta-mannosidase 2-like Neighboring gene callose synthase 12-like Neighboring gene small nucleolar RNA J33

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036653.1 Chromosome LG16 Reference ASM280686v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable serine/threonine-protein kinase At1g54610

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM280686v2 Primary Assembly

Genomic

  1. NC_036653.1 Reference ASM280686v2 Primary Assembly

    Range
    7698515..7702141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023657021.1 → XP_023512789.1  probable serine/threonine-protein kinase At1g54610

    Conserved Domains (1) summary
    cd07840
    Location:137 → 421
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases
Nucleotide Protein
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