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LOC111365200 ZFP161 motif-containing MPRA enhancer 76/77 [ Homo sapiens (human) ]

Gene ID: 111365200, updated on 11-Sep-2019

Summary

Gene symbol
LOC111365200
Gene description
ZFP161 motif-containing MPRA enhancer 76/77
Gene type
biological region
Feature type(s)
regulatory: enhancer, transcriptional_cis_regulatory_region
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was predicted to be a cell type-specific enhancer based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by high-throughput massively parallel reporter assays (MPRAs) in K562 erythroleukemia cells. This enhancer contains a conserved motif for the ZFP161 transcription factor. Mutation of this motif results in reduced enhancer activity. [provided by RefSeq, Nov 2017]

Genomic context

See LOC111365200 in Genome Data Viewer
Location:
Xp
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (49156324..49156468)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene G-patch domain and KOW motifs Neighboring gene uncharacterized LOC105373195 Neighboring gene RNA, 7SL, cytoplasmic 262, pseudogene Neighboring gene MAGI family member, X-linked Neighboring gene prickle planar cell polarity protein 3 Neighboring gene proteolipid protein 2

Genomic regions, transcripts, and products

General gene information

Other Names

  • ZFP161 transcription factor MPRA enhancer 76/77
  • massively parallel reporter assay enhancer 76/77

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_055815.1 

    Range
    101..245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    49156324..49156468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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