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ZWINT ZW10 interacting kinetochore protein [ Homo sapiens (human) ]

Gene ID: 11130, updated on 7-Jun-2020

Summary

Official Symbol
ZWINTprovided by HGNC
Official Full Name
ZW10 interacting kinetochore proteinprovided by HGNC
Primary source
HGNC:HGNC:13195
See related
Ensembl:ENSG00000122952 MIM:609177
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SIP30; ZWINT1; KNTC2AP; HZwint-1
Summary
This gene encodes a protein that is clearly involved in kinetochore function although an exact role is not known. It interacts with ZW10, another kinetochore protein, possibly regulating the association between ZW10 and kinetochores. The encoded protein localizes to prophase kinetochores before ZW10 does and it remains detectable on the kinetochore until late anaphase. It has a uniform distribution in the cytoplasm of interphase cells. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Expression
Broad expression in bone marrow (RPKM 17.2), testis (RPKM 16.4) and 21 other tissues See more
Orthologs

Genomic context

See ZWINT in Genome Data Viewer
Location:
10q21.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (56357227..56361273, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (58117016..58121063, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type containing 4 pseudogene Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 21 Neighboring gene uncharacterized LOC105378313 Neighboring gene microRNA 3924

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC117174

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein N-terminus binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell division IEA
Inferred from Electronic Annotation
more info
 
establishment of localization in cell IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
establishment of localization in cell IDA
Inferred from Direct Assay
more info
PubMed 
mitotic cell cycle checkpoint IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic cell cycle checkpoint IDA
Inferred from Direct Assay
more info
PubMed 
mitotic sister chromatid segregation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic sister chromatid segregation IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
condensed chromosome kinetochore IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 
cytosol TAS
Traceable Author Statement
more info
 
dendrite IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
kinetochore IDA
Inferred from Direct Assay
more info
PubMed 
nuclear body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear body IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
ZW10 interactor
Names
SNAP25 interacting protein of 30 kDa
ZW10 interactor, kinetochore protein
human ZW10 interacting protein-1
zwint-1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033939.1 RefSeqGene

    Range
    5015..9047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001005413.1NP_001005413.1  ZW10 interactor isoform b

    See identical proteins and their annotated locations for NP_001005413.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame segment compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
    Source sequence(s)
    BC016357, BC020979, BG615304, BM724168
    Consensus CDS
    CCDS31205.1
    UniProtKB/Swiss-Prot
    O95229
    Related
    ENSP00000354921.6, ENST00000361148.6
    Conserved Domains (1) summary
    pfam15556
    Location:29230
    Zwint; ZW10 interactor
  2. NM_007057.4NP_008988.2  ZW10 interactor isoform a

    See identical proteins and their annotated locations for NP_008988.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) is the predominant transcript and differs in the 3' UTR compared to variant 2. Variants 1 and 2 both encode isoform a.
    Source sequence(s)
    AC010996, BC000411, BC016357, BC020979, BG615304
    Consensus CDS
    CCDS7249.1
    UniProtKB/Swiss-Prot
    O95229
    Related
    ENSP00000363055.3, ENST00000373944.8
    Conserved Domains (1) summary
    pfam15556
    Location:29277
    Zwint; ZW10 interactor
  3. NM_032997.2NP_127490.1  ZW10 interactor isoform a

    See identical proteins and their annotated locations for NP_127490.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Variants 1 and 2 both encode isoform a.
    Source sequence(s)
    BC000411, BC016357, BC020979, BG615304
    Consensus CDS
    CCDS7249.1
    UniProtKB/Swiss-Prot
    O95229
    Related
    ENSP00000378801.1, ENST00000395405.5
    Conserved Domains (1) summary
    pfam15556
    Location:29277
    Zwint; ZW10 interactor

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    56357227..56361273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017015605.2XP_016871094.1  ZW10 interactor isoform X2

  2. XM_024447784.1XP_024303552.1  ZW10 interactor isoform X1

    Conserved Domains (1) summary
    pfam15556
    Location:29309
    Zwint; ZW10 interactor

RNA

  1. XR_428692.3 RNA Sequence

    Related
    ENST00000489649.6

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005414.1: Suppressed sequence

    Description
    NM_001005414.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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