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CRYZL2P-SEC16B CRYZL2P-SEC16B readthrough [ Homo sapiens (human) ]

Gene ID: 111240474, updated on 25-Nov-2021

Summary

Official Symbol
CRYZL2P-SEC16Bprovided by HGNC
Official Full Name
CRYZL2P-SEC16B readthroughprovided by HGNC
Primary source
HGNC:HGNC:53757
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring read-through transcription between the neighboring CRYZL2P (crystallin zeta like 2 pseudogene) and SEC16B (SEC16 homolog B, endoplasmic reticulum export factor) genes on chromosome 1. The readthrough transcript encodes a protein that shares sequence identity with the downstream gene product. [provided by RefSeq, Oct 2017]
Orthologs
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Genomic context

See CRYZL2P-SEC16B in Genome Data Viewer
Location:
1q25.2
Exon count:
38
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (177928788..178037976, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (177897923..178007111, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1645 Neighboring gene long intergenic non-protein coding RNA 1741 Neighboring gene SEC16 homolog B, endoplasmic reticulum export factor Neighboring gene crystallin zeta like 2, pseudogene Neighboring gene RASAL2 antisense RNA 1 Neighboring gene uncharacterized LOC105371630 Neighboring gene RAS protein activator like 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Clone Names

  • FLJ00305, FLJ58538, KIAA1928, DKFZp686C2486

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in ER to Golgi transport vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
is_active_in endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum exit site IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein transport protein Sec16B
Names
SEC16 homolog B
leucine zipper transcription regulator 2
regucalcin gene promoter region-related protein p117

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356505.2NP_001343434.1  protein transport protein Sec16B

    Status: VALIDATED

    Source sequence(s)
    AL160007, AL356279, AL359075
    Conserved Domains (1) summary
    cd09233
    Location:327683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
  2. NM_001356506.2NP_001343435.1  protein transport protein Sec16B

    Status: VALIDATED

    Source sequence(s)
    AL160007, AL356279, AL359075
    Conserved Domains (1) summary
    cd09233
    Location:327683
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

RNA

  1. NR_151492.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL160007, AL356279, AL359075

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    177928788..178037976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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