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LINC02488 long intergenic non-protein coding RNA 2488 [ Homo sapiens (human) ]

Gene ID: 111082994, updated on 4-Mar-2025

Summary

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Official Symbol
LINC02488provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2488provided by HGNC
Primary source
HGNC:HGNC:53467
See related
AllianceGenome:HGNC:53467
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTD-2316B1
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Genomic context

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See LINC02488 in Genome Data Viewer
Location:
5q14.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (87662042..87679409)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (88143217..88160582)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (86957859..86975226)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379066 Neighboring gene RNA, U6 small nuclear 727, pseudogene Neighboring gene uncharacterized LOC124901222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:86872157-86872704 Neighboring gene long intergenic non-protein coding RNA 2144 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:87017762-87018262 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:87018263-87018763 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:87050992-87051631 Neighboring gene VISTA enhancer hs853 Neighboring gene uncharacterized LOC124901023 Neighboring gene VISTA enhancer hs266 Neighboring gene VISTA enhancer hs267 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:87253511-87254010 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:87310460-87310960 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:87310961-87311461 Neighboring gene NANOG hESC enhancer GRCh37_chr5:87345495-87346036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:87347843-87348384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:87348385-87348925 Neighboring gene uncharacterized LOC105379070

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy. Wang Z, et al. Oncotarget, 2017 May 9. PMID 28415557, Free PMC Article
  2. Discovery of 342 putative new genes from the analysis of 5'-end-sequenced full-length-enriched cDNA human transcripts. Dalla E, et al. Genomics, 2005 Jun. PMID 15885500

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149089.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008939, AI928860, DR033777

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    87662042..87679409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    88143217..88160582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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