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LOC111011529 bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like [ Momordica charantia (bitter melon) ]

Gene ID: 111011529, updated on 21-Dec-2023
Gene symbol
LOC111011529
Gene description
bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Momordica charantia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104504.1 (24133..28290, complement)

NW_019104504.1Genomic Context describing neighboring genes Neighboring gene flavonol synthase/flavanone 3-hydroxylase-like Neighboring gene uncharacterized LOC111011532 Neighboring gene vegetative cell wall protein gp1-like Neighboring gene bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like Neighboring gene dicarboxylate transporter 2.1, chloroplastic

Genomic Sequence:
NW_019104504 Unplaced Scaffold Reference ASM199503v1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP cyclohydrolase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in riboflavin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like

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RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM199503v1

Genomic

  1. NW_019104504.1 Reference ASM199503v1

    Range
    24133..28290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022285330.1 → XP_022141022.1  bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like isoform X1

    UniProtKB/TrEMBL
    A0A6J1CIP4
    Conserved Domains (1) summary
    PLN02831
    Location:94 → 535
    PLN02831; Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase

  2. XM_022285331.1 → XP_022141023.1  bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like isoform X2

    UniProtKB/TrEMBL
    A0A6J1CJC4
    Conserved Domains (1) summary
    PLN02831
    Location:93 → 534
    PLN02831; Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Nucleotide Protein Strain
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