Format

Send to:

Choose Destination

sh3tc1 SH3 domain and tetratricopeptide repeats 1 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110962121, updated on 12-Oct-2018

Summary

Gene symbol
sh3tc1
Gene description
SH3 domain and tetratricopeptide repeats 1
See related
Ensembl:ENSAPOG00000011235
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs

Genomic context

See sh3tc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM210954v1 (GCF_002109545.1) Unplaced Scaffold NW_019030104.1 (171506..196818)

NW_019030104.1Genomic Context describing neighboring genes Neighboring gene endosialin-like Neighboring gene somatostatin receptor type 1-like Neighboring gene zinc finger protein 239-like Neighboring gene HtrA serine peptidase 3 Neighboring gene peroxisomal acyl-coenzyme A oxidase 3-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_019030104 Unplaced Scaffold Reference ASM210954v1

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
SH3 domain and tetratricopeptide repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Acanthochromis polyacanthus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM210954v1

Genomic

  1. NW_019030104.1 Reference ASM210954v1

    Range
    171506..196818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022210022.1XP_022065714.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X2

    Conserved Domains (3) summary
    sd00006
    Location:10621089
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:10651130
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:199253
    SH3; Src Homology 3 domain superfamily
  2. XM_022210021.1XP_022065713.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Related
    ENSAPOP00000027025.1, ENSAPOT00000002270.1
    Conserved Domains (3) summary
    sd00006
    Location:11421169
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11451210
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:279333
    SH3; Src Homology 3 domain superfamily
Support Center