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SMA5 glucuronidase beta pseudogene [ Homo sapiens (human) ]

Gene ID: 11042, updated on 29-Mar-2018

Summary

Gene symbol
SMA5
Gene description
glucuronidase beta pseudogene
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 23.3), thyroid (RPKM 11.3) and 23 other tissues See more

Genomic context

See SMA5 in Genome Data Viewer
Location:
5q13.2
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 5 NC_000005.10 (70481043..70585722, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (69776870..69881549, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986356 Neighboring gene general transcription factor IIH subunit 2B (pseudogene) Neighboring gene NLR family apoptosis inhibitory protein pseudogene Neighboring gene POM121 membrane glycoprotein (rat) pseudogene Neighboring gene putative POM121-like protein 1-like Neighboring gene POM121 membrane glycoprotein (rat) pseudogene Neighboring gene uncharacterized LOC107986354 Neighboring gene POM121 membrane glycoprotein (rat) pseudogene Neighboring gene uncharacterized LOC105379020 Neighboring gene uncharacterized LOC107986355 Neighboring gene uncharacterized LOC107986358

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034021.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC146944

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p12 Primary Assembly

    Range
    70481043..70585722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005993.4: Suppressed sequence

    Description
    NG_005993.4: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
  2. NM_021036.1: Suppressed sequence

    Description
    NM_021036.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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