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Ptch1 patched 1 [ Mus pahari (shrew mouse) ]

Gene ID: 110333595, updated on 15-Mar-2024

Summary

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Gene symbol
Ptch1
Gene description
patched 1
See related
Ensembl:MGP_PahariEiJ_G0019698
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
26
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 16 NC_034605.1 (65918469..65983867, complement)

Chromosome 16 - NC_034605.1Genomic Context describing neighboring genes Neighboring gene FA complementation group C Neighboring gene small nucleolar RNA SNORA71 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene ERCC excision repair 6 like 2 Neighboring gene hydroxysteroid 17-beta dehydrogenase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034605.1 Chromosome 16 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hedgehog family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hedgehog receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables smoothened binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein patched homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034605.1 Reference PAHARI_EIJ_v1.1

    Range
    65918469..65983867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021215202.2 → XP_021070861.1  protein patched homolog 1 isoform X1

    Related
    MGP_PahariEiJ_P0041329, MGP_PahariEiJ_T0041329.1
    Conserved Domains (1) summary
    TIGR00918
    Location:29 → 1192
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

  2. XM_029547317.1 → XP_029403177.1  protein patched homolog 1 isoform X2

    Conserved Domains (1) summary
    TIGR00918
    Location:1 → 1055
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family

  3. XM_029547318.1 → XP_029403178.1  protein patched homolog 1 isoform X3

    Conserved Domains (1) summary
    cl25655
    Location:2 → 183
    Patched; Patched family
Nucleotide Protein
Heading Accession and Version

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