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Atf6b activating transcription factor 6 beta [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110312537, updated on 15-Mar-2024

Summary

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Gene symbol
Atf6b
Gene description
activating transcription factor 6 beta
See related
Ensembl:MGP_CAROLIEiJ_G0021471
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
18
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 17 NC_034586.1 (31434741..31442651)

Chromosome 17 - NC_034586.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene FKBP prolyl isomerase like Neighboring gene tenascin XB Neighboring gene steroid 21-hydroxylase Neighboring gene complement C4-B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034586.1 Chromosome 17 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-6 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034586.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    31434741..31442651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021186210.1 → XP_021041869.1  cyclic AMP-dependent transcription factor ATF-6 beta

    UniProtKB/TrEMBL
    A0A6P5RA03
    Related
    MGP_CAROLIEiJ_P0044278, MGP_CAROLIEiJ_T0044278.1
    Conserved Domains (3) summary
    cd14700
    Location:332 → 383
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    cl26386
    Location:235 → 328
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl26464
    Location:134 → 327
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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