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SCO7538 LysR family transcriptional regulator [ Streptomyces coelicolor A3(2) ]

Gene ID: 1102976, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO7538
Gene description
LysR family transcriptional regulator
Locus tag
SCO7538
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC8G12.14
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: 8359287-8359379 PS00044 Bacterial regulatory proteins, lysR family signature
  • Loc: 8359353-8359673 Pfam match to entry PF00126 HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family, score 86.50, E-value 5.6e-22
Names
LysR family transcriptional regulator
NP_631582.1
  • SC8G12.14, possible LysR-family transcriptional regulator, len: 322 aa. Similar to many regulators e.g. Escherichia coli SW:OXYR_ECOLI(EMBL:J04553) hydrogen peroxide-inducible genes activator, OxyR (305 aa), fasta scores opt: 323 z-score: 373.2 E(): 2.5e-13 29.4% identity in 296 aa overlap and Streptomyces coelicolor TR:CAB71819(EMBL:AL138662) LysR-family transcriptional regulator, SC8E4A.14C (300 aa), fasta scores opt: 488 z-score: 563.0 E(): 6.7e-24 34.0% identity in 288 aa overlap. Contains a Prosite hit to PS00044 Bacterial regulatory proteins, lysR family signature and a Pfam match to entry PF00126 HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family with the helix-turn-helix motif situated between residues 24..45 (+4.98 SD).

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    8359215..8360183
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_631582.1 LysR family transcriptional regulator [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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