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SCO7212 glycosyl hydrolase [ Streptomyces coelicolor A3(2) ]

Gene ID: 1102650, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO7212
Gene description
glycosyl hydrolase
Locus tag
SCO7212
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC2H12.11c
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: c8013788-8013396 Pfam match to entry PF00652 Ricin_B_lectin, Similarity to lectin domain of ricin beta-chain, 3 copies., score 90.60, E-value 3e-23
  • Loc: c8016266-8016264 TTA /leucine codon, possible target for bldA regulation.

Repeated regions

  • Loc: c8013788-8013394

stem_loop

  • Loc: c8016157-8016113
Names
glycosyl hydrolase
NP_631268.1
  • SC2H12.11c, possible glycosyl hydrolase, len: 962 aa. Similar to many including: Arthrobacter sp. SW:E13B_ARTSP(EMBL:D23668) glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39) (548 aa), fasta scores opt: 455 z-score: 456.5 E(): 5.9e-18 29.8% identity in 544 aa overlap. Also similar to the N-terminus of Streptomyces coelicolor TR:O69947(EMBL:AL023862) hypothetical 133.5 kd protein, SC3F9.07 (1238 aa), fasta scores opt: 3612 z-score: 3597.9 E(): 0 63.9% identity in 831 aa overlap. Note, the last 131 aa of this CDS are identical to those in the analogous position on the adjoining CDS, SC2H12.10c. Contains a possible N-terminal signal sequence. Contains a Pfam match to entry PF00652 Ricin_B_lectin, Similarity to lectin domain of ricin beta-chain, 3 copies. Contains a TTA leucine

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    8013393..8016281 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_631268.1 glycosyl hydrolase [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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