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COL9A3 collagen type IX alpha 3 chain [ Sus scrofa (pig) ]

Gene ID: 110257487, updated on 15-Mar-2024

Summary

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Official Symbol
COL9A3provided by VGNC
Official Full Name
collagen type IX alpha 3 chainprovided by VGNC
Primary source
VGNC:VGNC:108713
See related
Ensembl:ENSSSCG00000040554
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 6.0), lung (RPKM 4.0) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
32
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (62074108..62094228)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene MRG domain binding protein Neighboring gene opioid growth factor receptor Neighboring gene transcription factor like 5 Neighboring gene death inducer-obliterator 1 Neighboring gene GID complex subunit 8 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010459.5 Chromosome 17 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-3(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    62074108..62094228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021078227.1 → XP_020933886.1  collagen alpha-3(IX) chain

    UniProtKB/TrEMBL
    A0A287AD51, A0A8D1N974
    Related
    ENSSSCP00000041760.2, ENSSSCT00000040031.3
    Conserved Domains (1) summary
    pfam01391
    Location:319 → 378
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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