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SCO7034 aminotransferase [ Streptomyces coelicolor A3(2) ]

Gene ID: 1102472, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO7034
Gene description
aminotransferase
Locus tag
SCO7034
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC1H10.23; SC2C3.01
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: 7821997-7822428 Pfam match to entry PF00202 aminotran_3, Aminotransferases class-III pyridoxal-phosphate, score 178.00, E-value 2.4e-61
  • Loc: 7822510-7823118 Pfam match to entry PF00202 aminotran_3, Aminotransferases class-III pyridoxal-phosphate, score 264.70, E-value 1.7e-91
  • Loc: 7822621-7822734 PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site

General protein information

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Names
aminotransferase
NP_733721.1
  • SC2C3.01, probable aminotransferase, len: >275 aa; similar to SW:GABT_ECOL (EMBL:M88334) Escherichia coli 4-aminobutyrate aminotransferase (EC 2.6.1.19) GabT, 426 aa; fasta scores: opt: 634 z-score: 729.2 E(): 0; 40.8% identity in 233 aa overlap. Contains Pfam match to entry PF00202 aminotran_3, Aminotransferases class-III pyridoxal-phosphate and match to Prosite entry PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site
    SC1H10.23, possible aminotransferase, partial CDS len: > 187 aa. Similar to Escherichia coli SW:ARGD_ECOLI (EMBL:M32796) acetylornithine aminotranferase (EC 2.6.1.11), ArgD (405 aa), fasta scores opt: 288 z-score:0.0 E(): 0.0 34.44% identity in 151 aa overlap. Also similar to many other aminotransferases e.g. Bacillus subtilis SW:GABT_BACSU(EMBL:D50453) probable 4-aminobutyrate aminotransferase (EC 2.6.1.19), fasta scores opt:399 z-score: 483.6 E(): 1.7e-19 36.2% identity in 177 aa overlap. Contains a Pfam match to entry PF00202 aminotran_3, Aminotransferases class-III pyridoxal-phosphate.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    7821937..7823205
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_733721.1 aminotransferase, partial [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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