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SCO7016 LacI family transcriptional regulator [ Streptomyces coelicolor A3(2) ]

Gene ID: 1102454, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO7016
Gene description
LacI family transcriptional regulator
Locus tag
SCO7016
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC1H10.05c
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c7798216-7797482 Pfam match to entry PF00532 Peripla_BP_like, Periplasmic binding proteins and sugar binding domain of the LacI family., score 103.20, E-value 5.2e-27
  • Loc: c7798360-7798298 Pfam match to entry PF00356 lacI, Bacterial regulatory proteins, lacI family, score 27.60, E-value 3e-06

General protein information

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Names
LacI family transcriptional regulator
NP_631080.1
  • SC1H10.05c, possible LacI-family transcriptional regulatory protein, len: 336 aa. Identical to Streptomyces lividans protein encoded on the 1 kb TR: Q57094(EMBL:U22894) left direct repeat sequence contained within the amplifiable AUD1 element (336 aa), fasta scores opt: 2173 z-score: 2549.4 E():0 99.4% identity in 336 aa overlap. Also highly similar to Streptomyces coelicolor SW:MALR_STRCO (EMBL:Y07706) maltose operon transcriptional repressor, MalR or SC10B7.03c (344 aa), fasta scores opt: 1137 z-score: 1336.5 E():0 53.7% identity in 341 aa overlap. This gene is duplicated on this cosmid and shares 94% identity in a 337 bp overlap with CDS SC1H10.03c. Contains Pfam hits to Pfam match to entry PF00532 Peripla_BP_like, Periplasmic binding proteins and sugar binding domain of the LacI family and Pfam match to entry PF00356 lacI, Bacterial regulatory proteins, lacI family with the helix-turn-helix motif situated between residues 3..24 (+7.33 SD).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    7797371..7798381 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_631080.1 LacI family transcriptional regulator [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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