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SCO6911 pseudo [ Streptomyces coelicolor A3(2) ]

Gene ID: 1102350, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO6911
Gene description
pseudo
Locus tag
SCO6911
Gene type
pseudo
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC1B2.17; SC1B2.18
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: 7676742-7677550 SC1B2.17, probable insertion element IS1647 transposase, len: 119 aa. Identical Streptomyces coelicolor TR:O69846(EMBL:AL023702) insertion element IS1647 transposase, SC1C3.04 (119 aa), fasta scores opt: 821 z-score: 1063.8 E(): 0 100.0% identity in 119 aa overlap. Also highly similar to many others e.g. Streptomyces coelicolor TR:CAB52913(EMBL:AL109949) transposase, SCJ11.28 (fragment) (116 aa), fasta scores opt: 623 z-score: 810.9 E(): 0 77.4% identity in 115 aa overlap. The complete transposase is probably translated by ribosomal frameshifting into the downstream CDS.
    SC1B2.18,probable insertion element IS1647 transposase, len: 150 aa. Identical Streptomyces coelicolor TR:O69847(EMBL:AL023702) insertion element IS1647 transposase, SC1C3.05 (150 aa), fasta scores opt: 1038 z-score: 1276.4 E():0 99.3% identity in 150 aa overlap. Contains a Pfam match to entry PF01675 Transposase_13, Transposase. The complete transposase is probably translated by ribosomal frameshifting from the upstream ORF.;probable insertion element IS1647 transposase.
  • Loc: 7677087-7677094 possible programmed ribosomal frameshift signal
  • Loc: 7677272-7677514 Pfam match to entry PF01675 Transposase_13, Transposase, score 5.70, E-value 0.00085