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TRAF5 TNF receptor associated factor 5 [ Phascolarctos cinereus (koala) ]

Gene ID: 110222706, updated on 15-Mar-2024

Summary

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Gene symbol
TRAF5
Gene description
TNF receptor associated factor 5
See related
Ensembl:ENSPCIG00000006121
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344077.1 (4673497..4730422, complement)

NW_018344077.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110222733 Neighboring gene RD3 regulator of GUCY2D Neighboring gene REST corepressor 3 Neighboring gene uncharacterized LOC110222743

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344077 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thioesterase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344077.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    4673497..4730422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021007855.1 → XP_020863514.1  TNF receptor-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1C8
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 185
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:406 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:235 → 338
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins

  2. XM_021007852.1 → XP_020863511.1  TNF receptor-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1C8
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 185
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:406 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:235 → 338
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins

  3. XM_021007853.1 → XP_020863512.1  TNF receptor-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1C8
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 185
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:406 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:235 → 338
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins

  4. XM_021007859.1 → XP_020863518.1  TNF receptor-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1C8
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 185
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:406 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:235 → 338
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins

  5. XM_021007857.1 → XP_020863516.1  TNF receptor-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1C8
    Related
    ENSPCIP00000007210.2, ENSPCIT00000009144.2
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 185
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:406 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:235 → 338
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins

  6. XM_021007858.1 → XP_020863517.1  TNF receptor-associated factor 5 isoform X2

    UniProtKB/TrEMBL
    A0A6P5LYD4
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 183
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:380 → 527
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:209 → 312
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins

  7. XM_021007851.1 → XP_020863510.1  TNF receptor-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1C8
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 185
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:406 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:235 → 338
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins

  8. XM_021007854.1 → XP_020863513.1  TNF receptor-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1C8
    Conserved Domains (4) summary
    pfam02176
    Location:130 → 185
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:406 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam04156
    Location:235 → 338
    IncA; IncA protein
    cd16642
    Location:45 → 87
    mRING-HC-C3HC3D_TRAF5; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) and similar proteins
Nucleotide Protein
Heading Accession and Version

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