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PRDM1 PR/SET domain 1 [ Phascolarctos cinereus (koala) ]

Gene ID: 110201367, updated on 16-Apr-2019

Summary

Gene symbol
PRDM1
Gene description
PR/SET domain 1
See related
Ensembl:ENSPCIG00000015185
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs

Genomic context

See PRDM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344257.1 (1176773..1331787)

NW_018344257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110201373 Neighboring gene uncharacterized LOC110201356 Neighboring gene uncharacterized LOC110201359 Neighboring gene autophagy related 5 Neighboring gene crystallin beta-gamma domain containing 1

Genomic regions, transcripts, and products

Genomic Sequence:
NW_018344257 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344257.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    1176773..1331787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020976944.1XP_020832603.1  PR domain zinc finger protein 1 isoform X2

    Conserved Domains (4) summary
    smart00317
    Location:50170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:393653
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:542562
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:582607
    zf-H2C2_2; Zinc-finger double domain
  2. XM_020976945.1XP_020832604.1  PR domain zinc finger protein 1 isoform X2

    Conserved Domains (4) summary
    smart00317
    Location:50170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:393653
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:542562
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:582607
    zf-H2C2_2; Zinc-finger double domain
  3. XM_020976941.1XP_020832600.1  PR domain zinc finger protein 1 isoform X1

    Related
    ENSPCIP00000019918.1, ENSPCIT00000024585.2
    Conserved Domains (4) summary
    smart00317
    Location:86206
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:429689
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:578598
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:618643
    zf-H2C2_2; Zinc-finger double domain
  4. XM_020976942.1XP_020832601.1  PR domain zinc finger protein 1 isoform X2

    Related
    ENSPCIP00000045617.1, ENSPCIT00000063162.1
    Conserved Domains (4) summary
    smart00317
    Location:50170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:393653
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:542562
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:582607
    zf-H2C2_2; Zinc-finger double domain
  5. XM_020976946.1XP_020832605.1  PR domain zinc finger protein 1 isoform X3

    Related
    ENSPCIP00000044352.1, ENSPCIT00000053091.1
    Conserved Domains (4) summary
    smart00317
    Location:148
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    sd00017
    Location:420440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:418440
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:460485
    zf-H2C2_2; Zinc-finger double domain
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