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SCO6520 RNA polymerase sigma factor [ Streptomyces coelicolor A3(2) ]

Gene ID: 1101959, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO6520
Gene description
RNA polymerase sigma factor
Locus tag
SCO6520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC5C7.05
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Sigma(B) serves as a master regulator that triggers other related sigma factors in a cascade, and thus regulates differentiation and osmotic and oxidative response in S. coelicolor.
    Title: A master regulator sigmaB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor.
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General gene information

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Homology

Miscellaneous features

  • Loc: 7210181-7210849 Pfam match to entry PF00140 sigma70, Sigma-70 factors, score 210.40, E-value 2.8e-59

General protein information

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Names
RNA polymerase sigma factor
NP_630601.1
  • SC5C7.05, probable RNA polymerase sigma factor, len: 266 aa; simlar to S. coelicolor sigma factors of the SigB subfamily e.g. TR:O52313 (EMBL:AF036131) RNA polymerase secondary sigma factor SigG (263 aa), fasta scores; opt: 1258 z-score: 1540.5 E(): 0, 72.9% identity in 251 aa overlap, and to RPOF_STRAU RNA polymerase sigma-F factor (297 aa), fasta scores; opt: 713 z-score: 858.3 E(): 0, 42.6% identity in 312 aa overlap. Possible alternative start 216 bp upstream, not supported by FramePlot. Contains helix-turn-helix motif at aa 228-249 (Score 2104, +6.35 SD) and Pfam match to entry PF00140 sigma70, Sigma-70 factors, score 210.40, E-value 2.8e-59

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    7210082..7210882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_630601.1 RNA polymerase sigma factor [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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