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Slc35b1 solute carrier family 35, member B1 [ Mus musculus (house mouse) ]

Gene ID: 110172, updated on 5-Mar-2024

Summary

Official Symbol
Slc35b1provided by MGI
Official Full Name
solute carrier family 35, member B1provided by MGI
Primary source
MGI:MGI:1343133
See related
Ensembl:ENSMUSG00000020873 AllianceGenome:MGI:1343133
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AXER; Ugalt2; UGTrel1
Summary
Predicted to enable UDP-galactose transmembrane transporter activity and UDP-glucose transmembrane transporter activity. Predicted to be involved in UDP-galactose transmembrane transport. Predicted to act upstream of or within carbohydrate transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Is expressed in genitourinary system; jaw; skeleton; and submandibular gland primordium. Orthologous to human SLC35B1 (solute carrier family 35 member B1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in large intestine adult (RPKM 76.5), duodenum adult (RPKM 41.3) and 28 other tissues See more
Orthologs
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Genomic context

See Slc35b1 in Genome Data Viewer
Location:
11 D; 11 59.01 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (95275696..95282602)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (95384856..95391776)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1841 Neighboring gene predicted gene 11520 Neighboring gene STARR-seq mESC enhancer starr_30502 Neighboring gene STARR-positive B cell enhancer ABC_E594 Neighboring gene family with sequence similarity 117, member A Neighboring gene STARR-positive B cell enhancer ABC_E3009 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:95253828-95254029 Neighboring gene STARR-seq mESC enhancer starr_30505 Neighboring gene STARR-positive B cell enhancer ABC_E3010 Neighboring gene STARR-positive B cell enhancer ABC_E10708 Neighboring gene speckle-type BTB/POZ protein Neighboring gene predicted gene, 53646

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (1) 
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP:ADP antiporter activity ISO
Inferred from Sequence Orthology
more info
 
enables UDP-galactose transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables UDP-glucose transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in UDP-galactose transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 35 member B1
Names
ATP/ADP exchanger ER
UDP-galactose translocator 2
UDP-galactose transporter-related protein 1
endoplasmic reticulum ATP/ADP translocase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357797.2NP_001344726.1  solute carrier family 35 member B1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL662875
    Conserved Domains (1) summary
    pfam08449
    Location:1212
    UAA; UAA transporter family
  2. NM_016752.4NP_058032.3  solute carrier family 35 member B1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL662875
    Consensus CDS
    CCDS25277.1
    UniProtKB/Swiss-Prot
    P97858, Q8CF70
    Related
    ENSMUSP00000021243.10, ENSMUST00000021243.16
    Conserved Domains (1) summary
    pfam08449
    Location:16309
    UAA; UAA transporter family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    95275696..95282602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531986.3XP_006532049.1  solute carrier family 35 member B1 isoform X1

    Conserved Domains (1) summary
    pfam08449
    Location:1185
    UAA; UAA transporter family
  2. XM_030245471.1XP_030101331.1  solute carrier family 35 member B1 isoform X1

    Conserved Domains (1) summary
    pfam08449
    Location:1185
    UAA; UAA transporter family