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SCO6273 type I polyketide synthase [ Streptomyces coelicolor A3(2) ]

Gene ID: 1101714, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO6273
Gene description
type I polyketide synthase
Locus tag
SCO6273
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC2C4.03c
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: c6902241-6902194 PS00012 Phosphopantetheine attachment site
  • Loc: c6902319-6902116 Pfam match to entry PF00550 pp-binding, Phosphopantetheine attachment site, score 68.50, E-value 2.5e-17
  • Loc: c6902652-6902632 PS00340 Growth factor and cytokines receptors family signature 2
  • Loc: c6905670-6904726 Pfam match to entry PF00698 Acyl_transf, Acyl transferase domain, score 248.50, E-value 9.5e-71
  • Loc: c6906774-6906724 PS00606 Beta-ketoacyl synthases active site
  • Loc: c6907251-6905980 Pfam match to entry PF00109 ketoacyl-synt, Beta-ketoacyl synthase, score 801.60, E-value 2.8e-237

General protein information

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Names
type I polyketide synthase
NP_630372.1
  • SC2C4.03c, probable type I polyketide synthase, len: 2152 aa; N-terminal domain almost identical to TR:Q9L8J0 (EMBL:AF202898) Streptomyces coelicolor A3(2) type I polyketide synthase (fragment), 720 aa; fasta scores: opt: 4356 z-score: 4494.6 E(): 0; 93.8% identity in 721 aa overlap and C-terminal domain similar to SW:HETM_ANASP (EMBL:L22883) Anabaena sp. polyketide synthase HetM, 506 aa; blastp scores: Score= 761 (267.9 bits), Expect= 2.2e-74, Sum P(2)= 2.2e-74; Identities= 184/491 (37%), Positives= 278/491 (56%). Also highly similar, in this same cosmid, to the N-terminal region of SC2C4.04c and to SC2C4.05c. Contains Pfam matches to entries PF00109 ketoacyl-synt, Beta-ketoacyl synthase, PF00698 Acyl_transf, Acyl transferase domain and PF00550 pp-binding, Phosphopantetheine attachment site and matches to Prosite entries PS00606 Beta-ketoacyl synthases active site, PS00340 Growth factor and cytokines receptors family signature 2 and PS00012 Phosphopantetheine attachment site

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    6900898..6907356 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_630372.1 type I polyketide synthase [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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