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SCO6016 pseudo [ Streptomyces coelicolor A3(2) ]

Gene ID: 1101458, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO6016
Gene description
pseudo
Locus tag
SCO6016
Gene type
pseudo
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC1C3.04; SC1C3.05
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: 6599193-6600001 SC1C3.04, probable insertion element IS1647 transposase, len: 119 aa; similar to many e.g. Burkholderia cepacia YI22_BURCE insertion element IS402 hypothetical protein (147 aa), fasta scores; opt: 283 z-score: 436.3 E(): 4.5e-17, 37.9%identity in 116 aa overlap. The complete transposase is probably translated by ribosomal frameshifting into the downstream ORF
    SC1C3.05, probable insertion element IS1647 transposase, len: 150 aa; similar to many e.g. Burkholderia cepacia YI21_BURCE insertion element is 402 hypothetical protein (211 aa), fasta scores opt: 429 z-score: 674.5 E(): 2.4e-30, 44.8%identity in 143 aa overlap. The complete transposase is probably translated by ribosomal frameshifting from the upstream ORF; insertion element IS1647 transposase
  • Loc: 6599539-6599545 possible programmed ribosomal frameshift signal