U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCO5416 transcriptional regulator [ Streptomyces coelicolor A3(2) ]

Gene ID: 1100856, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

Go to the top of the page Help
Gene symbol
SCO5416
Gene description
transcriptional regulator
Locus tag
SCO5416
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SC8F4.20c
NEW
Try the new Gene table
Try the new Transcript table

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Miscellaneous features

  • Loc: c5885764-5885504 Pfam match to entry PF00165 HTH_2, Bacterial regulatory helix-turn-helix proteins, araC family, score 87.30, E-value 3.1e-22

General protein information

Go to the top of the page Help
Names
transcriptional regulator
NP_629555.1
  • SC8F4.20c, probable transcriptional regulator, len: 337 aa; previously partially sequenced therefore identical to TR:Q9X950 (EMBL:AJ237976). Similar to many proposed transcriptional regulators eg. TR:CAB61299 (EMBL:AL132991) AraC-family transcriptional regulator from Streptomyces coelicolor (311 aa) fasta scores; opt: 859, z-score: 986.2, E(): 0, 47.8% identity in 312 aa overlap. Contains Pfam match to entry PF00165 HTH_2, Bacterial regulatory helix-turn-helix proteins, araC family

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    5885486..5886499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_629555.1 transcriptional regulator [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.