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PRDM1 PR/SET domain 1 [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110071754, updated on 8-Sep-2017

Summary

Gene symbol
PRDM1
Gene description
PR/SET domain 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs

Genomic context

See PRDM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150694.1 (695775..800135, complement)

NW_018150694.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110071260 Neighboring gene autophagy related 5 Neighboring gene uncharacterized LOC110071925 Neighboring gene prolyl endopeptidase Neighboring gene popeye domain containing 3

Genomic regions, transcripts, and products

Genomic Sequence:
NW_018150694.1 Unplaced Scaffold Reference pvi1.1

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150694.1 Reference pvi1.1

    Range
    695775..800135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020779691.1XP_020635350.1  PR domain zinc finger protein 1

    Conserved Domains (4) summary
    smart00317
    Location:64170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:514632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:521541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:561586
    zf-H2C2_2; Zinc-finger double domain
  2. XM_020779606.1XP_020635265.1  PR domain zinc finger protein 1

    Conserved Domains (4) summary
    smart00317
    Location:64170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:514632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:521541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:561586
    zf-H2C2_2; Zinc-finger double domain
  3. XM_020779431.1XP_020635090.1  PR domain zinc finger protein 1

    Conserved Domains (4) summary
    smart00317
    Location:64170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:514632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:521541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:561586
    zf-H2C2_2; Zinc-finger double domain
  4. XM_020779523.1XP_020635182.1  PR domain zinc finger protein 1

    Conserved Domains (4) summary
    smart00317
    Location:64170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:514632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:521541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:561586
    zf-H2C2_2; Zinc-finger double domain
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