U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCO4885 lipoprotein [ Streptomyces coelicolor A3(2) ]

Gene ID: 1100326, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

Go to the top of the page Help
Gene symbol
SCO4885
Gene description
lipoprotein
Locus tag
SCO4885
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
2SCK8.11
NEW
Try the new Gene table
Try the new Transcript table

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Miscellaneous features

  • Loc: 5318457-5319461 Pfam match to entry PF02608 Bmp, , score 228.20, E-value 1.2e-64
  • Loc: 5318460-5318492 PS00013 Prokaryotic membrane lipoprotein lipid attachment site

General protein information

Go to the top of the page Help
Names
lipoprotein
NP_629038.1
  • 2SCK8.11, probable lipoprotein, len: 348 aa; similar to SW:YUFN_BACSU (EMBL:Z93937) Bacillus subtilis hypothetical lipoprotein precursor YufN, 350 aa; fasta scores: opt: 663 z-score: 689.2 E(): 8e-31; 36.8% identity in 334 aa overlap, to TR:CAC14304 (EMBL:AJ276209) Clostridium sticklandii substrate binding lipoprotein precursor of an ABC transporter BmpA, 349 aa; fasta scores: opt: 560 z-score: 583.6 E(): 6e-25; 36.1% identity in 355 aa overlap and to Streptomyces coelicolor probable lipoprotein 2SCK8.10, 347 aa; fasta scores: opt: 1727 z-score: 1622.6 E(): 0; 78.4% identity in 347 aa overlap. Contains Pfam match to entry PF02608 Bmp and properly positioned match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Also contains possible N-terminal region signal peptide sequence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    5318421..5319467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_629038.1 lipoprotein [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.