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specc1 sperm antigen with calponin homology and coiled-coil domains 1 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109996005, updated on 8-Sep-2017

Summary

Gene symbol
specc1
Gene description
sperm antigen with calponin homology and coiled-coil domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs

Genomic context

See specc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114763.1 (120801..199398)

NW_018114763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109996009 Neighboring gene flotillin-2a Neighboring gene adenosine A2b receptor Neighboring gene zinc finger SWIM-type containing 7 Neighboring gene nuclear receptor corepressor 1

Genomic regions, transcripts, and products

Genomic Sequence:
NW_018114763.1 Unplaced Scaffold Reference BallGen_V1

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114763.1 Reference BallGen_V1

    Range
    120801..199398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020649935.1XP_020505591.1  cytospin-B isoform X1

    Conserved Domains (3) summary
    cd00014
    Location:9561056
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    pfam04880
    Location:239331
    NUDE_C; NUDE protein, C-terminal conserved region
    cl25732
    Location:352723
    SMC_N; RecF/RecN/SMC N terminal domain
  2. XM_020649936.1XP_020505592.1  cytospin-B isoform X1

    Conserved Domains (3) summary
    cd00014
    Location:9561056
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    pfam04880
    Location:239331
    NUDE_C; NUDE protein, C-terminal conserved region
    cl25732
    Location:352723
    SMC_N; RecF/RecN/SMC N terminal domain
  3. XM_020649937.1XP_020505593.1  cytospin-B isoform X2

    Conserved Domains (3) summary
    cd00014
    Location:870970
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    pfam04880
    Location:153245
    NUDE_C; NUDE protein, C-terminal conserved region
    cl25732
    Location:266637
    SMC_N; RecF/RecN/SMC N terminal domain
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