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SCO4034 RNA polymerase sigma factor [ Streptomyces coelicolor A3(2) ]

Gene ID: 1099470, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO4034
Gene description
RNA polymerase sigma factor
Locus tag
SCO4034
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
2SC10A7.38c
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: c4431280-4431239 PS00715 Sigma-70 factors family signature 1
  • Loc: c4431370-4430702 Pfam match to entry PF00140 sigma70, Sigma-70 factor, score 286.00, E-value 4.7e-82

General protein information

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Names
RNA polymerase sigma factor
NP_628216.1
  • 2SC10A7.38c, probable RNA polymerase sigma factor, len: 318 aa; highly similar to TR:Q9RIS5 (EMBL:AJ249581) Streptomyces coelicolor A3(2) Sig15 protein, 304 aa; fasta scores: opt: 1201 z-score: 1341.5 E(): 0; 66.6% identity in 287 aa overlap and to SW:RPOF_STRCO (EMBL:L11648) Streptomyces coelicolor RNA polymerase sigma-F factor SigF or RpoX, 287 aa; fasta scores: opt: 950 z-score: 1063.4 E(): 0; 58.6% identity in 261 aa overlap. Contains Pfam match to entry PF00140 sigma70, Sigma-70 factor and match to Prosite entry PS00715 Sigma-70 factors family signature 1. Also contains a possible helix-turn-helix motif at residues 284..305 (+6.30 SD)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    4430684..4431640 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_628216.1 RNA polymerase sigma factor [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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