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SCO3947 ABC transporter [ Streptomyces coelicolor A3(2) ]

Gene ID: 1099383, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO3947
Gene description
ABC transporter
Locus tag
SCO3947
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
cydCD; SCD78.14
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: 4343589-4344422 Pfam match to entry PF00664 ABC_tran, ABC transporter transmembrane region., score 57.10, E-value 3.7e-13
  • Loc: 4343994-4344068 PS00043 Bacterial regulatory proteins, gntR family signature
  • Loc: 4344615-4345169 Pfam match to entry PF00005 ABC_tran, ABC transporters, score 222.70, E-value 5.4e-63
  • Loc: 4344636-4344659 PS00017 ATP /GTP-binding site motif A (P-loop)
  • Loc: 4344948-4344992 PS00211 ABC transporters family signature
  • Loc: 4346394-4346948 Pfam match to entry PF00005 ABC_tran, ABC transporters, score 168.80, E-value 9.3e-47
  • Loc: 4346415-4346438 PS00017 ATP /GTP-binding site motif A (P-loop)
  • Loc: 4346727-4346771 PS00211 ABC transporters family signature
Names
ABC transporter
NP_628131.1
  • SCD78.14, cydCD, probable ABC transporter, len: 1172 aa; N-terminal similarity to CYDD_ECOLI (EMBL:L21749) ABC transporter ATP-binding protein from Escherichia coli (588 aa), fasta scores; opt: 736, z-score: 950.9, E(): 0, (39.2% identity in525 aa overlap) and CYDC_BACSU (EMBL :D83026) ABC transporter ATP-binding protein from Bacillus subtilis (567 aa), fasta scores; opt: 1174, z-score:949.4, E(): 0 (36.0% identity in 566 aa overlap). Also has full length similarity to MDR4_DROME (EMBL:M59076) multidrug resistance protein homolog from Drosophila melanogaster fasta scores; opt: 575,z-score: 856.3, E():0, (27.0% identity in 1162 aa overlap). Contains 2 x ATP /GTP-binding motifs (both PS00017), 2 x ABC transporter family signatures (both PS00211). Also contains Pfam match to entry PF00664 ABC transporter transmembrane region and 2 x Pfam matches to entry PF00005 (see misc_features). Contains possible hydrophobic membrane spanning regions

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    4343538..4347056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_628131.1 ABC transporter [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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