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SCO3869 WD-40 repeat-containing protein [ Streptomyces coelicolor A3(2) ]

Gene ID: 1099305, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO3869
Gene description
WD-40 repeat-containing protein
Locus tag
SCO3869
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SCH18.06
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: 4253403-4253426 PS00017 ATP/GTP-binding site motif A (P-loop)
  • Loc: 4255896-4256012 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 35.30, E-value 1.4e-06
  • Loc: 4255971-4256015 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4256034-4256150 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 48.10, E-value 1.9e-10
  • Loc: 4256109-4256153 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4256172-4256288 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 31.50, E-value 2e-05
  • Loc: 4256247-4256291 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4256307-4256423 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 40.80, E-value 3.1e-08
  • Loc: 4256382-4256426 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4256445-4256561 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 36.00, E-value 8.6e-07
  • Loc: 4256520-4256564 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4256583-4256699 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 35.60, E-value 1.1e-06
  • Loc: 4256721-4256837 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 25.80, E-value 0.001
  • Loc: 4256841-4256936 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 3.50, E-value 19
  • Loc: 4256895-4256939 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4256958-4257074 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 2.50, E-value 26
  • Loc: 4257114-4257218 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 13.10, E-value 1
  • Loc: 4257177-4257221 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4257240-4257356 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 46.30, E-value 7e-10
  • Loc: 4257315-4257359 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4257378-4257494 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 43.30, E-value 5.3e-09
  • Loc: 4257453-4257497 PS00678 Trp-Asp (WD) repeats signature
  • Loc: 4257516-4257632 Pfam match to entry PF00400 WD40, WD domain, G-beta repeat, score 43.60, E-value 4.4e-09
Names
WD-40 repeat-containing protein
NP_628056.1
  • SCH18.06, probable WD-40 repeat protein, len: 1676 aa; C-terminal domain identical to previously sequenced TR:Q9ZEM4 (EMBL:AJ131817) Streptomyces coelicolor WD-40 repeat protein WdpA, 1049 aa; fasta scores: opt: 7025 z-score: 5917.8 E(): 0; 99.8% identity in 1049 aa overlap. Contains 13x Pfam matches to entry PF00400 WD40, WD domain, G-beta repeat, 9x matches to Prosite entry PS00678 Trp-Asp (WD) repeats signature and match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    4252857..4257887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_628056.1 WD-40 repeat-containing protein [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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