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nfatc2ip nuclear factor of activated T cells 2 interacting protein [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109893106, updated on 14-Mar-2024

Summary

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Gene symbol
nfatc2ip
Gene description
nuclear factor of activated T cells 2 interacting protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG6
Exon count:
10
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG6 NC_034179.2 (61963596..61969929, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG6 NC_034179.1 (56588216..56594311, complement)

Linkage Group LG6 - NC_034179.2Genomic Context describing neighboring genes Neighboring gene ataxin 2 like Neighboring gene protein spinster homolog 1-like Neighboring gene SAGA-associated factor 29 Neighboring gene nuclear protein 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NFATC2-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034179.2 Reference Okis_V2 Primary Assembly

    Range
    61963596..61969929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020486157.2 → XP_020341746.1  NFATC2-interacting protein isoform X1

    Conserved Domains (2) summary
    cd17078
    Location:216 → 288
    Ubl_SLD1_NFATC2ip; SUMO-like domain 1 (SLD1), structurally similar to a beta-grasp ubiquitin-like fold, found in nuclear factor of activated T-cells 2 interacting protein (NFATC2ip) and similar proteins
    cl28922
    Location:301 → 374
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_031827100.1 → XP_031682960.1  NFATC2-interacting protein isoform X2

    Conserved Domains (2) summary
    cd17078
    Location:203 → 275
    Ubl_SLD1_NFATC2ip; SUMO-like domain 1 (SLD1), structurally similar to a beta-grasp ubiquitin-like fold, found in nuclear factor of activated T-cells 2 interacting protein (NFATC2ip) and similar proteins
    cl28922
    Location:288 → 361
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

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