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SCO2978 hypothetical protein [ Streptomyces coelicolor A3(2) ]

Gene ID: 1098411, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO2978
Gene description
hypothetical protein
Locus tag
SCO2978
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SCE50.06
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: 3242997-3243029 PS00013 Prokaryotic membrane lipoprotein lipid attachment site
  • Loc: 3243426-3244304 Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein, score 68.70, E-value 2.8e-18

General protein information

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Names
hypothetical protein
NP_627201.1
  • SCE50.06, possible hypothetical protein, len: 465 aa; similar to TR:Q55471 (EMBL:D64006) Synechocystis sp. hypothetical 46.5 kD protein, 421 aa; fasta scores: opt: 788 z-score: 803.7 E(): 0; 35.2% identity in 386 aa overlap, to C-terminal part of SW:MSME_STRMU (EMBL:M77351) Streptococcus mutans multiple sugar binding protein precursor MsmE, 420 aa; fasta scores: opt: 240 z-score: 249.6 E(): 1.9e-06; 25.7% identity in 303 aa overlap and to SW:AGLE_RHIME (EMBL:AF045609) Rhizobium meliloti (Sinorhizobium meliloti) alpha-glucosidase-binding periplasmic protein AglE precursor, 429 aa; fasta scores: opt: 503 Z-score: 522.9 E(): 1.7e-21; 35.452% identity in 409 aa overlap. Contains Pfam match to entry PF01547 SBP_bacterial_1, Bacterial extracellular solute-binding protein and correctly situated match to Prosite entry PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Contains also possible N-terminal region signal peptide sequence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    3242925..3244322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_627201.1 hypothetical protein SCO2978 [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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Molecular Biology Databases