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SCO2465 RNA polymerase principal sigma factor [ Streptomyces coelicolor A3(2) ]

Gene ID: 1097899, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO2465
Gene description
RNA polymerase principal sigma factor
Locus tag
SCO2465
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
hrdA; SC7A8.04c
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: c2653262-2653182 PS00716 Sigma-70 factors family signature 2
  • Loc: c2653769-2653728 PS00715 Sigma-70 factors family signature 1
  • Loc: c2653859-2653176 Pfam match to entry PF00140 sigma70, Sigma-70 factor, score 452.40, E-value 3.7e-132
Names
RNA polymerase principal sigma factor
NP_626707.1
  • SC7A8.04c, hrdA, RNA polymerase principal sigma factor, len: 396 aa; identical to previously sequenced SW:HRDA_STRCO (EMBL:X52980) Streptomyces coelicolor RNA polymerase principal sigma factor HrdA, 396 aa and highly similar to SW:RPSD_STRAU (EMBL:M90410) Streptomyces aureofaciens RNA polumerase sigma factor RpoD, 317 aa; fasta scores: opt: 1792 z-score: 1762.6 E(): 0; 89.9% identity in 316 aa overlap and to S. coelicolor SC5B8.10, 511 aa; fasta scores: opt: 1276 z-score: 1056.4 E(): 0; 51.6% identity in 397 aa overlap. Contains Pfam match to entry PF00140 sigma70, Sigma-70 factor and two matches to Prosite entries PS00715 Sigma-70 factors family signature 1 and PS00716 Sigma-70 factors family signature 2. Contains also a possible helix-turn-helix motif at residues 355..376 (+6.21 SD)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    2653137..2654327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_626707.1 RNA polymerase principal sigma factor [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P18182.2

Gene LinkOut

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