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SCO2442 GntR family transcriptional regulator [ Streptomyces coelicolor A3(2) ]

Gene ID: 1097876, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO2442
Gene description
GntR family transcriptional regulator
Locus tag
SCO2442
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SCC24.13c
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c2620776-2620702 PS00043 Bacterial regulatory proteins, gntR family signature
  • Loc: c2620833-2620654 Pfam match to entry PF00392 gntR, Bacterial regulatory proteins, gntR family, score 82.80, E-value 4.9e-24

General protein information

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Names
GntR family transcriptional regulator
NP_626685.1
  • SCC24.13c, probable gntR-family transcriptional regulator, len: 235 aa; similar to SW:UXUR_ECOLI (EMBL:U14003) Escherichia coli, Uxu operon transcriptional regulator UxuR, 257 aa; fasta scores: opt: 338 z-score: 385.5 E(): 4.9e-14; 32.6% identity in 236 aa overlap and to TR:CAB6127 (EMBL:AL132991) Streptomyces coelicolor transcriptional regulator SCF55.06, 253 aa; fasta scores: opt: 380 z-score: 432.1 E(): 1.2e-16; 33.1% identity in 236 aa overlap. Contains Pfam match to entry PF00392 gntR, Bacterial regulatory proteins, gntR family and match ot Prosite entry S00043 Bacterial regulatory proteins, gntR family signature and possible helix-turn-helix motif at residues 37..58 (+3.83 SD)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    2620174..2620881 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_626685.1 GntR family transcriptional regulator [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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