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LINC02233 long intergenic non-protein coding RNA 2233 [ Homo sapiens (human) ]

Gene ID: 109729132, updated on 4-Mar-2025

Summary

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Official Symbol
LINC02233provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2233provided by HGNC
Primary source
HGNC:HGNC:53104
See related
AllianceGenome:HGNC:53104
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC02233 in Genome Data Viewer
Location:
4q32.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (159666503..159777784, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (163017318..163128577, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (160587655..160698936, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900926 Neighboring gene uncharacterized LOC107986324 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:160461571-160462096 Neighboring gene uncharacterized LOC105379457 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:160515695-160516602 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:160528774-160529416 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:160619025-160619524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:160635612-160636305 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:160636306-160636998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:160669863-160670816 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:160871778-160872444 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:160897920-160898702 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:160947640-160948839 Neighboring gene uncharacterized LOC107986239 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_75090 Neighboring gene long intergenic non-protein coding RNA 2477

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features. Lanzós A, et al. Sci Rep, 2017 Jan 27. PMID 28128360, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146278.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021101, AC079748, AC097466

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    159666503..159777784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    163017318..163128577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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