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LOC109713427 glucan endo-1,3-beta-glucosidase 4 [ Ananas comosus (pineapple) ]

Gene ID: 109713427, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109713427
Gene description
glucan endo-1,3-beta-glucosidase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Ananas comosus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Bromeliaceae; Bromelioideae; Ananas
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Genomic context

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See LOC109713427 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly LG Location
100 current ASM154086v1 (GCF_001540865.1) 7 NC_033627.1 (4983553..4992691, complement)

Linkage Group 7 - NC_033627.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPM1-like Neighboring gene disease resistance protein RPM1-like Neighboring gene rRNA biogenesis protein RRP5 Neighboring gene ABC transporter C family member 5-like Neighboring gene bifunctional TH2 protein, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033627.1 Chromosome 7 Reference ASM154086v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ananas comosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM154086v1 Primary Assembly

Genomic

  1. NC_033627.1 Reference ASM154086v1 Primary Assembly

    Range
    4983553..4992691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020237502.1 → XP_020093091.1  glucan endo-1,3-beta-glucosidase 4 isoform X2

    UniProtKB/TrEMBL
    A0A199UPK8, A0A6P5FA61
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro_1; Glycosyl hydrolase family 1

  2. XM_020237500.1 → XP_020093089.1  glucan endo-1,3-beta-glucosidase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P5FIS6, A0A6V7QBA5
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro_1; Glycosyl hydrolase family 1

  3. XM_020237501.1 → XP_020093090.1  glucan endo-1,3-beta-glucosidase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P5FIS6, A0A6V7QBA5
    Conserved Domains (2) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:25 → 346
    Glyco_hydro_1; Glycosyl hydrolase family 1

  4. XM_020237503.1 → XP_020093092.1  glucan endo-1,3-beta-glucosidase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P5FBX4, A0A6V7QBA5
    Conserved Domains (2) summary
    smart00768
    Location:301 → 385
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:2 → 284
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
Heading Accession and Version

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