U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCO0927 LysR family transcriptional regulator [ Streptomyces coelicolor A3(2) ]

Gene ID: 1096350, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

Go to the top of the page Help
Gene symbol
SCO0927
Gene description
LysR family transcriptional regulator
Locus tag
SCO0927
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SCM10.15
NEW
Try the new Gene table
Try the new Transcript table

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Miscellaneous features

  • Loc: 973394-973816 Pfam match to entry PF00126 HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family, score 144.70, E-value 1.6e-39
  • Loc: 973436-973528 PS00044 Bacterial regulatory proteins, lysR family signature

General protein information

Go to the top of the page Help
Names
LysR family transcriptional regulator
NP_625225.1
  • SCM10.15, probable lysR-family transcriptional regulator, len: 278 aa; similar to TR:CAB55655 (EMBL:AL117385) Streptomyces coelicolor lysR-family transcriptional regulator SC5G9.07c, 287 aa; fasta scores: opt: 598 z-score: 666.9 E(): 9.3e-30; 47.9% identity in 286 aa overlap and to SW:ALSR_BACSU (EMBL:L04470) Bacillus subtilis ALS operon regulatory protein AlsR, 302 aa; fasta scores: opt: 398 z-score: 446.6 E(): 1.7e-17; 37.6% identity in 186 aa overlap. Contains Pfam match to entry PF00126 HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family and two mathces to Prosite entries PS00044 Bacterial regulatory proteins, lysR family signature and PS00216 Sugar transport proteins signature 1. Contains also a helix-turn-helix motif at residues 16..37 (+5.84 SD)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    973388..974224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_625225.1 LysR family transcriptional regulator [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.