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SCO0864 ECF family RNA polymerase sigma factor [ Streptomyces coelicolor A3(2) ]

Gene ID: 1096287, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO0864
Gene description
ECF family RNA polymerase sigma factor
Locus tag
SCO0864
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SCM2.17c
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: c911819-911619 Pfam match to entry PF00776 Sigma70_ECF, Sigma-70 factor (ECF subfamily), score 67.40, E-value 2.9e-16
Names
ECF family RNA polymerase sigma factor
NP_625164.1
  • SCM2.17c, probable ECF-family sigma factor, len: 198 aa. Highly similar to many sigma factors including: Streptomyces coelicolor TR:O86856 (EMBL:AJ007313) sigma factor SigT (236 aa), fasta scores opt: 268 z-score: 337.2 E(): 2.1e-11 34.3% identity in 181 aa overlap and Mycobacterium tuberculosis SW:RPSC_MYCTU (EMBL:Z73966) probable RNA polymerase sigma-C factor SigC (185 aa), fasta scores opt: 517 z-score: 643.3 E(): 1.9e-28 50.8% identity in 177 aa overlap. Note this CDS appears to be a duplicated on this cosmid and shares 68.5 % identity, in 197 aa overlap, with the downstream gene, SCM2.19c. Contains a Pfam match to entry PF00776 Sigma70_ECF, Sigma-70 factor (ECF subfamily).

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    911343..911939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_625164.1 ECF family RNA polymerase sigma factor [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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