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SCO0387 bi-domain-containing oxidoreductase [ Streptomyces coelicolor A3(2) ]

Gene ID: 1095810, discontinued on 9-Sep-2022
  • This record was discontinued.

Summary

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Gene symbol
SCO0387
Gene description
bi-domain-containing oxidoreductase
Locus tag
SCO0387
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SCF62.13
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: 405076-406167 Pfam match to entry PF00107 adh_zinc, Zinc-binding dehydrogenases, score -34.50, E-value 6.5e-08
  • Loc: 406282-406995 Pfam match to entry PF01408 GFO_IDH_MocA, Oxidoreductase family, score 121.00, E-value 2.2e-32

General protein information

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Names
bi-domain-containing oxidoreductase
NP_624709.1
  • SCF62.13. possible bi-domain oxidoreductase, len: 726 aa. The N-terminus is similar to many Zinc-binding dehydrogenases e.g. Sinorhizobium meliloti TR:O31186 (EMBL; AF031940) alcohol dehydrogenase (340 aa), fasta scores pt: 224 z-score: 241.8 E(): 4.1e-06 25.5% identity in 333 aa overlap. The C-terminus is similar to other oxidoreductases e.g. Zymomonas mobilis SW:GFO_ZYMMO (EMBL; M97379) glucose-fructose oxidoreductase precursor (EC 1.1.99.28) (439 aa), fasta scores opt: 243 z-score: 260.3 E(): 3.8e-07 26.1% identity in 272 aa overlap. Note this CDS is also weakly similar to the C-terminus of the Eukaryotic: Cochliobolus heterostrophus TR:Q92217 (EMBL; U68040) polyketide synthase (2530 aa), fasta scores opt: 164 z-score:0.0 E(): 0.0 25.52% identity in 576 aa overlap. Contains a Pfam match to entry PF00107 adh_zinc, Zinc-binding dehydrogenases and a Pfam match to entry PF01408 GFO_IDH_MocA, Oxidoreductase family. Also contains possible membrane spanning hydrophobic domains

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    405070..407250
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_624709.1 bi-domain-containing oxidoreductase [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
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