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SCO0255 sigma factor [ Streptomyces coelicolor A3(2) ]

Gene ID: 1095679, discontinued on 9-Sep-2022
  • This record was discontinued.
Gene symbol
SCO0255
Gene description
sigma factor
Locus tag
SCO0255
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Streptomyces coelicolor A3(2) (serovar: A3(2))
Lineage
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
Also known as
SCF20.01c; SCJ9A.34c
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Genomic Sequence:
NC_003888.3

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: c244073-243954 Pfam match to entry PF00158 sigma54, Sigma-54 transcription factors, score 36.00, E-value 3e-09
  • Loc: c244673-244632 PS00675 Sigma-54 interaction domain ATP-binding region A signature.
  • Loc: c244745-244611 Pfam match to entry PF00158 sigma54, Sigma-54 transcription factors, score 32.10, E-value 3.8e-08
Names
sigma factor
NP_733494.1
  • SCF20.01c, possible transcriptional regulator, len: >476aa; weakly similar to the N-terminal region of many transcriptional regulator eg. SW:ACOR_ALCEU acetoin catabolism regulatory protein from Alcaligenes eutrophus (668 aa) fasta scores; opt: 288, z-score: 292.1, E(): 6.6e-09, (26.8% identity in 496 aa overlap). Contains Pfam match to entry PF00158 sigma54, Sigma-54 transcription factors and Prosite match to PS00675 Sigma-54 interaction domain ATP-binding region A signature.
    SCJ9A.34c, partial CDS, possible transcriptional regulator, len: >185aa; similar to C-terminal region of many eg. SW:HYDG_SALTY hydrogenase regulatory gene from Salmonella typhimurium (441 aa) fasta scores; opt: 207, z-score: 258.1, E(): 5.2e-07, (31.3% identity in 134 aa overlap). Contains Pfam match to entry PF00158 sigma54, Sigma-54 transcription factors. Contains possible helix-turn-helix motif (+4.35 SD) 155-176aa.

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003888.3 Reference assembly

    Range
    243936..245672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_733494.1 sigma factor, partial [Streptomyces coelicolor A3(2)]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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