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PRDM1 PR/SET domain 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109563871, updated on 8-Sep-2017

Summary

Gene symbol
PRDM1
Gene description
PR/SET domain 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus (gb-synonym: Bos taurus indicus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs

Genomic context

See PRDM1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 9 NC_032658.1 (45917471..45940292, complement)

Chromosome 9 - NC_032658.1Genomic Context describing neighboring genes Neighboring gene autophagy related 5 Neighboring gene 40S ribosomal protein S3a-like Neighboring gene 40S ribosomal protein S3a-like Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene 60S ribosomal protein L6 pseudogene

Genomic regions, transcripts, and products

Genomic Sequence:
NC_032658.1 Chromosome 9 Reference Bos_indicus_1.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032658.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    45917471..45940292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019967293.1XP_019822852.1  PR domain zinc finger protein 1 isoform X1

    Conserved Domains (3) summary
    smart00317
    Location:100206
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:574692
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:581601
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_019967294.1XP_019822853.1  PR domain zinc finger protein 1 isoform X2

    Conserved Domains (3) summary
    smart00317
    Location:64170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:538656
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:545565
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. XM_019967295.1XP_019822854.1  PR domain zinc finger protein 1 isoform X3

    Conserved Domains (3) summary
    smart00317
    Location:572
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:440558
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:447467
    ZF_C2H2; C2H2 Zn finger [structural motif]
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