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CNTN1 contactin 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109559214, updated on 14-Mar-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 5 NC_032654.1 (43232660..43565953, complement)

Chromosome 5 - NC_032654.1Genomic Context describing neighboring genes Neighboring gene PDZ domain-containing RING finger protein 4-like Neighboring gene dihydrofolate reductase pseudogene Neighboring gene apomucin-like Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene mucin 19, oligomeric

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032654.1 Chromosome 5 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032654.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    43232660..43565953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019960785.1 → XP_019816344.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5BSY9
    Conserved Domains (7) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First immunoglobulin (Ig) domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:811 → 893
    fn3; Fibronectin type III domain
    cd04970
    Location:520 → 601
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:429 → 501
    Ig; Immunoglobulin domain

  2. XM_019960786.1 → XP_019816345.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5BT15
    Conserved Domains (4) summary
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd04970
    Location:520 → 602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:40 → 132
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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